Apple LogicPro does something special with bounce and catching host that corrupts Kontakt so the internal sequencer built into Scarbee Funk Guitarist doesn't work correct.
The solution is this:
1) Set Funk Guitarist output (Kontakt) to a BUS.
2) Create an audio track and set the INPUT to the same BUS just created.
3) Set the Audio track on RECORD but "stand" on the Funk Guitarist track so THIS track is the ACTIVE one.
4) press * (Record).